PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0069ss01710.1
Common NameLR48_Vigan406s019300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 203aa    MW: 22333.1 Da    PI: 4.9165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0069ss01710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-183585155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Vang0069ss01710.1 35 PVYHGVRKRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALTIKG 85
                       68*****887.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.9E-133585IPR001471AP2/ERF domain
PROSITE profilePS5103222.7213693IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-213693IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-313694IPR001471AP2/ERF domain
SMARTSM003803.0E-333699IPR001471AP2/ERF domain
CDDcd000182.21E-313794No hitNo description
PRINTSPR003671.0E-93748IPR001471AP2/ERF domain
PRINTSPR003671.0E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTQTTTSSTL SSPSSHSGPK AHARAKRPRD CSKHPVYHGV RKRNWGKWVS EIREPRKKSR  60
IWLGTFATPE MAARAHDVAA LTIKGQSAIL NFPEIADLLP RPLTCSPRDI QAAATAAASM  120
SKFDPVTQTS DSETETSEES ELSEIVELPN IEDSFDSSVD SFVMVDVVDS WMFPPLDSFC  180
AAFSDELFPQ QCCSETLLPI WD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-193198977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0069ss01710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407492.11e-147PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0L9T9Y31e-146A0A0L9T9Y3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T0B91e-146A0A0S3T0B9_PHAAN; Uncharacterized protein
STRINGGLYMA07G02001.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]