PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0069ss01710.2
Common NameLR48_Vigan406s019300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 194aa    MW: 21394.1 Da    PI: 4.9165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0069ss01710.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-182676155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Vang0069ss01710.2 26 PVYHGVRKRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALTIKG 76
                       68*****887.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-132676IPR001471AP2/ERF domain
PROSITE profilePS5103222.7212784IPR001471AP2/ERF domain
SMARTSM003803.0E-332790IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-212784IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-312785IPR001471AP2/ERF domain
PRINTSPR003679.6E-102839IPR001471AP2/ERF domain
CDDcd000188.58E-322885No hitNo description
PRINTSPR003679.6E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
LSSPSSHSGP KAHARAKRPR DCSKHPVYHG VRKRNWGKWV SEIREPRKKS RIWLGTFATP  60
EMAARAHDVA ALTIKGQSAI LNFPEIADLL PRPLTCSPRD IQAAATAAAS MSKFDPVTQT  120
SDSETETSEE SELSEIVELP NIEDSFDSSV DSFVMVDVVD SWMFPPLDSF CAAFSDELFP  180
QQCCSETLLP IWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-192289977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0069ss01710.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407492.11e-141PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD36e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0L9T9Y31e-139A0A0L9T9Y3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T0B91e-139A0A0S3T0B9_PHAAN; Uncharacterized protein
STRINGGLYMA07G02001.11e-104(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]