PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0069ss01810.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 246aa    MW: 28234.9 Da    PI: 4.9292
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0069ss01810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.37.3e-051570851
                       -HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHH CS
           Homeobox  8 tkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNr 51
                       ++++  eLe+ ++   ++ ++ +  +e+A++           +L+ +qV  WF+Nr
  Vang0069ss01810.1 15 SSDEMLELERIYKDmgEKPIDWKLCQEIARRFsslsntarktSLSWQQVEQWFKNR 70
                       677888999999966688889999999999999999999999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF167191.3E-2099179IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDTSTLTEQP FLKLSSDEML ELERIYKDMG EKPIDWKLCQ EIARRFSSLS NTARKTSLSW  60
QQVEQWFKNR QRVSQNKDSS SPNLVPLSAG LSSSKDISDL TFEARSTKDV AWHDVALFLN  120
YRVMCSGELE VRVRYAGFSK EQDEWVNVKQ GVRERSIPLA PSECQKLQDG NLILCFLRRV  180
HDPTECTCTF IIRYLHDQTE EEVSWNRLCC RPTEEESAVY PILAIDPTQS PSPSFSLNPI  240
ESLWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-40982142135SHH1 SAWADEE
4iur_B1e-40982142135SHH1 SAWADEE
4iut_A1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-40982142135SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0069ss01810.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150428e-74AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407436.11e-178PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2
TrEMBLA0A0S3T0M81e-175A0A0S3T0M8_PHAAN; Uncharacterized protein
STRINGXP_007135638.11e-140(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.15e-37sequence-specific DNA binding transcription factors;sequence-specific DNA binding