PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0070s00380.1
Common NameLR48_Vigan06g113700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28111 Da    PI: 9.069
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0070s00380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  Vang0070s00380.1  9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59
                      79***********************************************86 PP
2K-box104.71.2e-34751741100
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       y++++ ++++++++ +++ e+++Lk++i+ Lqr+ Rh++GedL s+slkeLq+LeqqL++slk+iR+++n+l++e+i+elqkkek++qe+n  
  Vang0070s00380.1  75 YAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLASMSLKELQSLEQQLDTSLKNIRNRRNDLMYESISELQKKEKRIQEQNSI 167
                       567778888899999****************************************************************************** PP

             K-box  94 Lrkklee 100
                       L kk++e
  Vang0070s00380.1 168 LAKKIKE 174
                       ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.268161IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-33292IPR002100Transcription factor, MADS-box
CDDcd002651.80E-40279No hitNo description
PRINTSPR004043.0E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2985172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.70588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERH ERYAYAERQL VANDSETQGN WTIEYTRLKA KIDLLQRNYR HYMGEDLASM  120
SLKELQSLEQ QLDTSLKNIR NRRNDLMYES ISELQKKEKR IQEQNSILAK KIKEKEQAVA  180
QHAVQWEQPN YRVDTSFLPQ QQPLPSLNIG GNNFNQDAAP ELGRNGLDLT LEPLYSCHLG  240
CF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21173172MEF2C
5f28_B4e-21173172MEF2C
5f28_C4e-21173172MEF2C
5f28_D4e-21173172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0070s00380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953620.0BT095362.1 Soybean clone JCVI-FLGm-14L12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522264.10.0truncated transcription factor CAULIFLOWER A-like
RefseqXP_017426838.10.0PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-123AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0L9USX71e-180A0A0L9USX7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T2D11e-180A0A0S3T2D1_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VW231e-180A0A1S3VW23_VIGRR; truncated transcription factor CAULIFLOWER A-like
STRINGXP_007153481.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-106MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]