PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0071ss00600.2

Common Name

LR48_Vigan192s000700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 202aa MW: 22823.2 Da PI: 4.8475

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0071ss00600.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.4	2.9e-07	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+ Ed++l ++++ +G g W+ +++ g Vang0071ss00600.2 14 KGAWTALEDKILTEYINVHGEGKWRHLPKRAG 45 79**************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-10	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.36E-7	8	45	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.667	9	55	IPR017877	Myb-like domain
CDD	cd00167	0.00122	16	47	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGRSPCCSKE GLNKGAWTAL EDKILTEYIN VHGEGKWRHL PKRAGVQHDQ NLKNQEWQYD 60 KGSCLVQTKA TRWSKVTVSD EISHHNDEDN KSNVGDHSKM KAFLVSPSSE SKNDPVLNFM 120 ENLEMDGSFF SELLKMDFPE SSCQGNKILE DNDNPSSVEK GYLSPKSSCE TTHFSWGDSL 180 YDPNFEFLPV TTFTETGFDW L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0071ss00600.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014515267.1	1e-107	myb-related protein 308-like
TrEMBL	A0A0L9T6S2	1e-111	A0A0L9T6S2_PHAAN; Uncharacterized protein
STRING	XP_007135450.1	2e-89	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07690.1	6e-17	myb domain protein 29

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]