PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0082s00050.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 232aa    MW: 26209.5 Da    PI: 6.6379
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0082s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.33.4e-101742082155
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       k +yp+++++ eLAk++gL+++q+ +WF N+R ++
  Vang0082s00050.1 174 KWPYPTEADKIELAKSTGLDQKQINNWFINQRKRH 208
                       679*****************************885 PP
2ELK32.51.9e-11128149122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK++LlrK+++++g+Lk EFs
  Vang0082s00050.1 128 ELKDRLLRKFGSHIGTLKLEFS 149
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-770110IPR005540KNOX1
PfamPF037902.4E-137295IPR005540KNOX1
PfamPF037892.4E-8128149IPR005539ELK domain
SMARTSM011886.5E-6128149IPR005539ELK domain
PROSITE profilePS512139.83128148IPR005539ELK domain
PROSITE profilePS5007113.281148211IPR001356Homeobox domain
SuperFamilySSF466896.42E-20149220IPR009057Homeodomain-like
SMARTSM003892.3E-14150215IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-28153212IPR009057Homeodomain-like
CDDcd000867.11E-15160212No hitNo description
PfamPF059202.4E-18168207IPR008422Homeobox KN domain
PROSITE patternPS000270186209IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDEMYGVPDY ADKPLMTPEN LIFPPDYPAF LTAARIPIFG SDDLFSGEPS AASASPAGIP  60
RHQDDDVATT VMKAKIASHP HYPRLLQAYI DCQKVSKENH DGGVSSDEDL STGDGDGQDG  120
QSKGEDRELK DRLLRKFGSH IGTLKLEFSK KKKKGKLPKE ARQTLLQWWN VHYKWPYPTE  180
ADKIELAKST GLDQKQINNW FINQRKRHWK PSENMQFSMM ENLNGRFLGD E*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0082s00050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-165AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519254.11e-118homeobox protein knotted-1-like 6 isoform X2
RefseqXP_017426913.11e-118PREDICTED: homeobox protein knotted-1-like 6 isoform X2
SwissprotQ84JS63e-61KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1S3VME91e-117A0A1S3VME9_VIGRR; homeobox protein knotted-1-like 6 isoform X2
STRINGXP_007157365.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.19e-50KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]