PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0082s00610.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 180aa    MW: 20480.4 Da    PI: 9.9621
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0082s00610.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.41.8e-061221423353
                       HHHHCTS-HHHHHHHHHHHHH CS
          Homeobox  33 LAkklgLterqVkvWFqNrRa 53 
                       LA+++gLt +qV +WF N R 
  Vang0082s00610.3 122 LARQIGLTRNQVANWFINARV 142
                       8******************96 PP
2BELL31.93.2e-1137634672
              BELL 46 akpYtslAlkaiSrhFrcLkdaiaeqi 72
                       ++Yt+l l +iSrhFrcL+d i++qi
  Vang0082s00610.3 37 TESYTTLTLSTISRHFRCLRDTISGQI 63
                      579***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075262.0E-53860IPR006563POX domain
SuperFamilySSF466896.42E-7120150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-9120146IPR009057Homeodomain-like
PfamPF059208.0E-6122142IPR008422Homeobox KN domain
CDDcd000861.34E-4122145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
AFVSEYVVWQ SDAGNGTLLA DIAKAAFLIG LQFFLPTESY TTLTLSTISR HFRCLRDTIS  60
GQIQVTQRSP GEQELIPRLR YVDEQLRQQK ALLQFGVMRQ AWRPQRGFPE TSLSKGFREN  120
LLARQIGLTR NQVANWFINA RVQLWSCITN RGLNFFLLLD DFYVTNAVNP LINQASISH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0082s00610.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-125AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218841.12e-51BEL1-like homeodomain protein 7
RefseqXP_020218842.12e-51BEL1-like homeodomain protein 7
RefseqXP_020218843.12e-51BEL1-like homeodomain protein 7
RefseqXP_029128055.12e-51BEL1-like homeodomain protein 7
SwissprotQ9FWS99e-34BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A151TC662e-50A0A151TC66_CAJCA; BEL1-like homeodomain protein 7
STRINGGLYMA06G03200.13e-50(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.24e-36BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]