PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0084s00290.1

Common Name

LR48_Vigan04g085200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRF

Protein Properties

Length: 542aa MW: 58371.3 Da PI: 8.743

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0084s00290.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.4	2.2e-22	189	228	5	44
WRC 5 grCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 +rCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e Vang0084s00290.1 189 RRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVE 228 8************************************998 PP
2	QLQ	53.3	8.5e-19	137	169	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FT aQ+ +L++Q+++yKy++a++PvP++Ll + Vang0084s00290.1 137 PFTSAQWRELERQAMIYKYMMASVPVPHDLLIP 169 8*****************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.0E-10	136	172	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.36	137	172	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.8E-13	137	169	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.146	185	229	IPR014977	WRC domain
Pfam	PF08879	5.5E-18	189	228	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MGEFGVPHMR KRSSSDNSGG SFVGLDVRVQ SPEALFHNKM TMMAHHNHHH RPLSSPFDND 60 SCAGDGDGPT AYMSFTNHIN LVSGASVLAP AIDGGCGAPA PVRTLQPFDI SPYTSPTTTS 120 STFKLSAGGM AASFGFPFTS AQWRELERQA MIYKYMMASV PVPHDLLIPT SLTPSSRSAC 180 SMNDPLLSRR CRRTDGKKWR CSRDVAPNHK YCERHMHRGR PRSRKPVEVN TKTATPTSIN 240 NNTHQIKRPR HECNPFPSIP DVTVAIPNPT SRKHGPSPHF LGSSTTLPGL DWMLNGDPIS 300 LGASDSEWQS LMHHKVGLSS ESSCNNPQPQ YLNSFTLYNT GLDQQNRRHP LFLNPLVVPM 360 ENLQPEKPRG FIDAWSNTET GENNAPTNSK NSAASIGKLT LSSLDLSMGG GAVNEDVGNV 420 NIGLGLMESI ANTHTDTKIS LSNWVNPAPW VGSTLGGPLA EVLRSSTVTA TTNERTSNTP 480 SPATTHVESN SPLGTMVSSP SGVLQKTLVS LSDSSSNSSP RVASSRANSE MALLRFQGNV 540 N*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MGEFGVPHMR KRSSSDNSGG SFVGLDVRVQ SPEALFHNKM TMMAHHNHHH RPLSSPFDND  60
SCAGDGDGPT AYMSFTNHIN LVSGASVLAP AIDGGCGAPA PVRTLQPFDI SPYTSPTTTS  120
STFKLSAGGM AASFGFPFTS AQWRELERQA MIYKYMMASV PVPHDLLIPT SLTPSSRSAC  180
SMNDPLLSRR CRRTDGKKWR CSRDVAPNHK YCERHMHRGR PRSRKPVEVN TKTATPTSIN  240
NNTHQIKRPR HECNPFPSIP DVTVAIPNPT SRKHGPSPHF LGSSTTLPGL DWMLNGDPIS  300
LGASDSEWQS LMHHKVGLSS ESSCNNPQPQ YLNSFTLYNT GLDQQNRRHP LFLNPLVVPM  360
ENLQPEKPRG FIDAWSNTET GENNAPTNSK NSAASIGKLT LSSLDLSMGG GAVNEDVGNV  420
NIGLGLMESI ANTHTDTKIS LSNWVNPAPW VGSTLGGPLA EVLRSSTVTA TTNERTSNTP  480
SPATTHVESN SPLGTMVSSP SGVLQKTLVS LSDSSSNSSP RVASSRANSE MALLRFQGNV  540
N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0084s00290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017420646.1	0.0	PREDICTED: growth-regulating factor 2 isoform X1
TrEMBL	A0A0L9UDP8	0.0	A0A0L9UDP8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3REI0	0.0	A0A0S3REI0_PHAAN; Uncharacterized protein
STRING	XP_007136458.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7324	28	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	5e-37	growth-regulating factor 7

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]