PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0084s00450.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 394aa MW: 45889.2 Da PI: 7.5826

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0084s00450.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.3	6.7e-10	2	57	32	91
FAR1 32 tfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++vCs+eg+ ++ + e +t +++ +C a +++ ++ ++kw + ++++eH+Hel+p Vang0084s00450.1 2 RLVCSREGRYVSSIRP---EVKTLPSQTKQCPAGITIARK-NDKWTIRTVVQEHSHELCP 57 689****9998877...999************99.9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-7	2	57	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-34	138	230	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
LRLVCSREGR YVSSIRPEVK TLPSQTKQCP AGITIARKND KWTIRTVVQE HSHELCPKRS 60 NLINLVKRDA RNFIRHHRRS LCKEGDGQTL LRHFSKMRDL NNEFFYDIEM DEDNKICSVF 120 WVDAKSRATC DEFGDVESFD TTYLTNKYDM PFAPFVGVNH HGQSILLGYG LLSLEDTASF 180 IWIFNCWLRC MCNKAPLGIV TDQCWAMANA IEEVFPKTRH RWCLWHIMKK IPEKIQCYKN 240 YVGIKSDLKE LVYECASATA FDRRWEQLLS THDLENNDWL STLYDERQKW VPCYLKNHFW 300 GGMSTTQRSE GMNAQKEIEA DFSSLNTTVS CGSQSPIERQ FQKEYTHAKF EEVQTEFHSR 360 MNCFIKHKVT EGVVNQYTIK ECQSGCSGWV SVE*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

LRLVCSREGR YVSSIRPEVK TLPSQTKQCP AGITIARKND KWTIRTVVQE HSHELCPKRS  60
NLINLVKRDA RNFIRHHRRS LCKEGDGQTL LRHFSKMRDL NNEFFYDIEM DEDNKICSVF  120
WVDAKSRATC DEFGDVESFD TTYLTNKYDM PFAPFVGVNH HGQSILLGYG LLSLEDTASF  180
IWIFNCWLRC MCNKAPLGIV TDQCWAMANA IEEVFPKTRH RWCLWHIMKK IPEKIQCYKN  240
YVGIKSDLKE LVYECASATA FDRRWEQLLS THDLENNDWL STLYDERQKW VPCYLKNHFW  300
GGMSTTQRSE GMNAQKEIEA DFSSLNTTVS CGSQSPIERQ FQKEYTHAKF EEVQTEFHSR  360
MNCFIKHKVT EGVVNQYTIK ECQSGCSGWV SVE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0084s00450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014515461.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S3VAT3	0.0	A0A1S3VAT3_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_007134998.1	1e-146	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-71	FAR1-related sequence 5