PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0126s00200.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 255aa    MW: 28900.3 Da    PI: 5.572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0126s00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-1870119255
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y GVr+++ +grWvAeI+d      ++ r +lg+++ ae+Aa+a+++a++ l+g
  Vang0126s00200.1  70 RYIGVRQRP-SGRWVAEIKDtI----QNIRLWLGTYDNAEDAARAYDEAARLLRG 119
                       799******.7*********33....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-2669126No hitNo description
PROSITE profilePS5103219.32270127IPR001471AP2/ERF domain
PfamPF008474.6E-1270119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2670126IPR001471AP2/ERF domain
SMARTSM003806.5E-3170133IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-1970127IPR016177DNA-binding domain
PRINTSPR003673.9E-77182IPR001471AP2/ERF domain
PRINTSPR003673.9E-793109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRALANAAMH HRSNVKESIM KGKMANKRKR WECEGGEKKS EEGKTEWEKL REEAASMAAA  60
ILGARRANKR YIGVRQRPSG RWVAEIKDTI QNIRLWLGTY DNAEDAARAY DEAARLLRGA  120
NTRTNFFPSQ SSPYKGSGED FSFGYNFAEN VYDEEKKIVS GKGEFEGCDF QFLDSGGSLS  180
YSFCPFEIAE EMVGAIEENK YYDVDDSALG RETFMMKYER KFSACFYTLT GVSECLRLQV  240
GQENGKELEN FLGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1369126462ATERF1
3gcc_A7e-1369126462ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0126s00200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416558.12e-91PREDICTED: ethylene-responsive transcription factor ERF088-like
TrEMBLA0A0L9TLY81e-79A0A0L9TLY8_PHAAN; Uncharacterized protein
STRINGXP_007158631.14e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-15related to AP2 11