PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0134s00140.1

Common Name

LR48_Vigan641s006300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 232aa MW: 25379.2 Da PI: 6.887

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0134s00140.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Vang0134s00140.1 57 YECKTCNRCFPSFQALGGHRASH 79 99**********99999998887 PP
2	zf-C2H2	14.2	0.00013	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Vang0134s00140.1 136 HECSICGAEFSSGQALGGHMRRH 158 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.68E-9	56	79	No hit	No description
Pfam	PF13912	6.3E-11	56	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	57	79	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.265	57	79	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.68E-9	131	158	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.3E-4	134	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	6.2E-13	135	159	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	136	158	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	136	158	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSTCSTADNS AAFEPPTTSN ELRNEEDEDL ANCLILLARG HSTPKPSHGK ESGLYVYECK 60 TCNRCFPSFQ ALGGHRASHK RFSKAGAEEK QVTTFGDNIS KNNHDDYCLT LQLSTVLYNS 120 SNSTRSSTVN AKSKVHECSI CGAEFSSGQA LGGHMRRHRN FLSSPSSGAI AYAGDRIPEI 180 PEIKKQKDVL NLDLNLPAPE DDHHRESNLL PFQSKEKVIV FSATSLVDCH Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0134s00140.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017409990.1	1e-173	PREDICTED: zinc finger protein ZAT5
Swissprot	Q681X4	2e-49	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A0L9TF82	1e-171	A0A0L9TF82_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RZ15	1e-171	A0A0S3RZ15_PHAAN; Uncharacterized protein
STRING	XP_007162794.1	1e-134	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	6e-51	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]