PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0134s00400.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 226aa    MW: 25720.3 Da    PI: 9.2277
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0134s00400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.71.8e-24104202186
          trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                       +Wt+ +v++Li a+ +++++ +++             +kk++W++vs+ m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ +++++++  
  Vang0134s00400.1 104 KWTDTMVRLLIMAVYYIGDETGSEGvdptkkkatgllQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQT 196
                       7***************999999764456667888999**********************************************5599****99 PP

          trihelix  81 yfdqle 86 
                       ++d ++
  Vang0134s00400.1 197 LLDTMD 202
                       999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.1E-22102193No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEPNALGGGI FPNISSGLLG VENLQNQQNP PHSLHHPQMV SYTSHHDTDT HQQHPPQSIK  60
HGYNYSMGKT NKLQITLSDE DEPVFTAEDS GDPKRKMSPW HRMKWTDTMV RLLIMAVYYI  120
GDETGSEGVD PTKKKATGLL QKKGKWKSVS RGMMEKGYYV SPQQCEDKFN DLNKRYKRVN  180
DILGKGTACR VVENQTLLDT MDLSPKMKEE VRKLLNSKHL FFREM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0134s00400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409978.11e-170PREDICTED: uncharacterized protein LOC108322415
TrEMBLA0A0S3RYZ81e-169A0A0S3RYZ8_PHAAN; Uncharacterized protein
STRINGXP_007162836.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-64sequence-specific DNA binding transcription factors