PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0134s00420.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 217aa    MW: 25107.4 Da    PI: 8.3703
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0134s00420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.2e-1855109256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+ ++t++qle Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k
  Vang0134s00420.1  55 EKKKRLTSNQLELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 109
                       57788*************************************************9 PP
2HD-ZIP_I/II118.53.7e-3855146192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+ktkqlE+ y++Lk++yd +++e+++L++ev +L++ l+
  Vang0134s00420.1  55 EKKKRLTSNQLELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVISNEKQKLQEEVMKLKAMLS 146
                       69**************************************************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1946113IPR009057Homeodomain-like
PROSITE profilePS5007117.92951111IPR001356Homeobox domain
SMARTSM003891.4E-1753115IPR001356Homeobox domain
CDDcd000861.75E-1654112No hitNo description
PfamPF000464.7E-1655109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-2057118IPR009057Homeodomain-like
PRINTSPR000317.0E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000317.0E-591107IPR000047Helix-turn-helix motif
PfamPF021831.5E-9111145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDWHYTTKPF LPHPDTLSFF YNYNNNPYPG VEMKQATLLE TGEGSIPAMY NGSKEKKKRL  60
TSNQLELLER SFQEEIKLDP ERKMKLSREL GLQPRQIAVW FQNRRTRWKT KQLEHLYDVL  120
KHQYDVISNE KQKLQEEVMK LKAMLSKEQG FGKQRLGGYP EISGVETVES TSEGLRGSNK  180
GKSNIDQVAD EGFCSFSVED YNTVSVPFSQ WPVVPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRTRWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0134s00420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409939.11e-160PREDICTED: homeobox-leucine zipper protein ATHB-22-like
TrEMBLA0A0S3RYX61e-160A0A0S3RYX6_PHAAN; Uncharacterized protein
STRINGXP_007162834.11e-139(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.16e-47homeobox 51