PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0134s00500.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 142aa MW: 16460.9 Da PI: 9.6184

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0134s00500.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.9e-19	50	104	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle+Le+ F+++ +++ e++ +L+++lgL+ r++ vWFqNrR+++k Vang0134s00500.1 50 EKKKRLTSNQLEILERSFQEETKLDPEKKMKLSRELGLQPRKIAVWFQNRRTRWK 104 67788*************************************************9 PP
2	HD-ZIP_I/II	112.6	2.5e-36	50	132	1	83
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 ekk+rl+++q+++LE+sF+ee+kL+pe+K++l+reLglqpr++avWFqnrR R+ktkqlE+ y+aLk++yd +++e+++L++e Vang0134s00500.1 50 EKKKRLTSNQLEILERSFQEETKLDPEKKMKLSRELGLQPRKIAVWFQNRRTRWKTKQLEHLYDALKHQYDVISNEKQKLQEE 132 69******************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.41E-20	38	108	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.718	46	106	IPR001356	Homeobox domain
SMART	SM00389	3.4E-17	48	110	IPR001356	Homeobox domain
CDD	cd00086	5.47E-15	49	107	No hit	No description
Pfam	PF00046	5.5E-17	50	104	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-20	52	113	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	81	104	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MVITTRSSNT LLLFQRNPLC CTCSGVEVQQ ATLLETGEGS IPSMHNGSKE KKKRLTSNQL 60 EILERSFQEE TKLDPEKKMK LSRELGLQPR KIAVWFQNRR TRWKTKQLEH LYDALKHQYD 120 VISNEKQKLQ EEGLCHERHP G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	106	RRTRWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0134s00500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017409938.1	2e-71	PREDICTED: homeobox-leucine zipper protein ATHB-22-like
Swissprot	Q4PSR7	1e-37	ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBL	A0A0S3RYY5	5e-70	A0A0S3RYY5_PHAAN; Uncharacterized protein
STRING	GLYMA19G37380.2	5e-60	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36610.1	4e-40	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]