PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0143s00190.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 340aa    MW: 39640.3 Da    PI: 10.5412
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0143s00190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.22.7e-1022683886
          trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                      ++  g++r++k+Ckek+en+ k+ k++ke+++++   + +t+++fdql+
  Vang0143s00190.1 22 LAGLGYHRNAKKCKEKFENVYKYNKRTKENKSGK--SHGKTYKFFDQLQ 68
                      6678*************************99996..55667******98 PP
2trihelix104.29.8e-33210295187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k ev+aLi++r++++++++++  k+plWe++s++m++ g++rs+k+Ckekwen+nk++kk+++++k+r  e+s+tcpyf++l+a
  Vang0143s00190.1 210 RWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKMRDNNKER-RENSKTCPYFHELDA 295
                       8*********************************************************************8.78889********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071736444IPR001005SANT/Myb domain
PfamPF138371.5E-62070No hitNo description
SMARTSM007170.025207269IPR001005SANT/Myb domain
PROSITE profilePS500907.027209267IPR017877Myb-like domain
PfamPF138372.9E-22209296No hitNo description
CDDcd122038.87E-24210274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSFGGNRWPR QETLALLKIR KLAGLGYHRN AKKCKEKFEN VYKYNKRTKE NKSGKSHGKT  60
YKFFDQLQAL ENHQRLTRKV LLKQEEMQKK FLEAMDKRER ERVAQQDNWR IQEMARINRE  120
HEILVQERST AAAKDAAVIA LLQKMYGQQN TTQHVQVQPP EQQNQTTLQS QLPTPMPNNN  180
FEIKKLNNGH HSATSTSTVT TSPATSSSSR WPKAEVHALI RLRTSLDTKY QENGPKAPLW  240
EDISIAMQRL GYNRSAKRCK EKWENINKYF KKMRDNNKER RENSKTCPYF HELDAIYKER  300
SLSQNPFGVF QNMKPNEMMM MEPLMVMIGV VGQTSATMN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0143s00190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437877.11e-158PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-72TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0S3T9Z11e-158A0A0S3T9Z1_PHAAN; Uncharacterized protein
STRINGXP_007152025.11e-146(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-63Trihelix family protein