PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0143s00260.1

Common Name

LR48_Vigan10g131700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 443aa MW: 50579.2 Da PI: 6.6634

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0143s00260.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.7	2.4e-26	117	212	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+++v++Li+a+++++e+ +++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++ Vang0143s00260.1 117 KWTDKMVRLLITAVSYIGEDAPSDCggarrkitvlQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPSLL 209 7*******************9988889999999********************************************669999999888 PP trihelix 83 dql 85 d + Vang0143s00260.1 210 DVI 212 766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-23	115	239	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MEGNLSQGGM VQGGSSFGGF DLPGSMRVHR QGHHPHSMNQ HQTHPCQGPS VHSSVHDGFP 60 LTMGTLQNCD QTMAMTEFSQ GDRNKNSPSD ESFAEEGVDG HQEGGRGKKG SPWQRVKWTD 120 KMVRLLITAV SYIGEDAPSD CGGARRKITV LQKKGKWKSV SKVMAERGYR VSPQQCEDKF 180 NDLNKRYKKL NDMLGRGTSC QVVENPSLLD VIDYLSEKEK DEVRKILSSK HLFYEEMCSY 240 HNCNRLHLPH DLELQRSLQL AHKNRDDHDS DDVRRSHHDD HDEDDLEVET DDHDDFEENY 300 ATHADSRGVY GEAGRPMKRS KPGQGHEDAA TFGSALNSQE YNKSSYPHMV QSDVNQAAPE 360 KMSSPWLQKQ WVDSRSLQLE EQKLQIQVEM LELEKQRFKW QKFSKKKDRE LEKLKLENER 420 MKLENERNAL ELKRKGVGAD FN*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MEGNLSQGGM VQGGSSFGGF DLPGSMRVHR QGHHPHSMNQ HQTHPCQGPS VHSSVHDGFP  60
LTMGTLQNCD QTMAMTEFSQ GDRNKNSPSD ESFAEEGVDG HQEGGRGKKG SPWQRVKWTD  120
KMVRLLITAV SYIGEDAPSD CGGARRKITV LQKKGKWKSV SKVMAERGYR VSPQQCEDKF  180
NDLNKRYKKL NDMLGRGTSC QVVENPSLLD VIDYLSEKEK DEVRKILSSK HLFYEEMCSY  240
HNCNRLHLPH DLELQRSLQL AHKNRDDHDS DDVRRSHHDD HDEDDLEVET DDHDDFEENY  300
ATHADSRGVY GEAGRPMKRS KPGQGHEDAA TFGSALNSQE YNKSSYPHMV QSDVNQAAPE  360
KMSSPWLQKQ WVDSRSLQLE EQKLQIQVEM LELEKQRFKW QKFSKKKDRE LEKLKLENER  420
MKLENERNAL ELKRKGVGAD FN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0143s00260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017437519.1	0.0	PREDICTED: uncharacterized protein LOC108343695
TrEMBL	A0A0L9VK51	0.0	A0A0L9VK51_PHAAN; Uncharacterized protein
STRING	XP_007152028.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-145	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]