PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0143s00280.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 81aa MW: 9496.99 Da PI: 10.8354

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0143s00280.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.5	7.4e-28	3	74	1	72
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 +W++qe+laL+++r++m+ ++r+++ k+plWeevs+k+++ g++r++k+Ckek+en+ k++k++keg+k+++ Vang0143s00280.1 3 KWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRKDGR 74 7*******************************************************************9983 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.969	1	60	IPR017877	Myb-like domain
Pfam	PF13837	7.2E-18	2	74	No hit	No description
CDD	cd12203	1.25E-20	2	67	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MKKWPRQETL ALLKIRSDMD VAFRDASVKG PLWEEVSRKL ADLGYHRNAK KCKEKFENVY 60 KYHKRTKEGR KDGRTSTRGK *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0143s00280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF372499	1e-82	AF372499.1 Glycine max GT-2 factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007152027.1	4e-41	hypothetical protein PHAVU_004G095400g
Swissprot	Q39117	3e-32	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	Q8W239	2e-41	Q8W239_SOYBN; GT-2 factor (Fragment)
TrEMBL	V7C532	1e-39	V7C532_PHAVU; Uncharacterized protein
STRING	XP_007152027.1	2e-40	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21033	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-39	Trihelix family protein