PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0143s00290.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 154aa    MW: 18086.8 Da    PI: 10.3121
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0143s00290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix108.15.8e-34893187
          trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                      rW+k ev+aLi++r+++e++++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  Vang0143s00290.1  8 RWPKVEVQALIDLRTNLETKYQENGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 93
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0021567IPR001005SANT/Myb domain
SuperFamilySSF466891.49E-5678IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-5764IPR009057Homeodomain-like
PROSITE profilePS500907.039765IPR017877Myb-like domain
CDDcd122031.16E-25772No hitNo description
PfamPF138373.5E-23794No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MMGASSSRWP KVEVQALIDL RTNLETKYQE NGPKGPLWEE ISALMRKMGY NRNAKRCKEK  60
WENINKYFKK VKESNKKRPE DSKTCPYFHQ LEALYKEKNK VEGQMKPESM MAPLMVQPEQ  120
QWPPQQGPSR SRKCQHHTWS HKPLTEGPPG GIFR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0143s00290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548114.13e-78trihelix transcription factor GT-2
RefseqXP_028208098.13e-78trihelix transcription factor GT-2-like
SwissprotQ391173e-53TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A445GJM27e-77A0A445GJM2_GLYSO; Trihelix transcription factor GT-2
TrEMBLK7MHS28e-77K7MHS2_SOYBN; Uncharacterized protein
TrEMBLQ8W2406e-80Q8W240_SOYBN; GT-2 factor (Fragment)
STRINGGLYMA16G28250.21e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-59Trihelix family protein