PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0149s00080.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 158aa MW: 18256.8 Da PI: 9.6305

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0149s00080.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	186.5	2.8e-58	4	117	4	117
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 ++rwlk+ e++ iL+n+ek++lt+e++++p+sgsl+L+n++++r+frkDG++w+kk+dg+tv E+he+LKvg+ve+l+cyYah+e++p+fqr Vang0149s00080.1 4 AQARWLKPAEVMYILQNHEKFQLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQKPNFQR 96 589**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylev 117 r+yw+L+ e+e+ivlvhy+++ Vang0149s00080.1 97 RSYWMLDPEYEHIVLVHYRNT 117 *****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	7.1E-76	1	118	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	79.808	1	123	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-50	4	116	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MTPAQARWLK PAEVMYILQN HEKFQLTQEP PQQPTSGSLF LFNKRVLRFF RKDGHNWRKK 60 RDGRTVGEAH ERLKVGNVEA LNCYYAHGEQ KPNFQRRSYW MLDPEYEHIV LVHYRNTSEV 120 SLRHLIPDKD DNDTCTLAGK VVTKSIACLT DGATKTG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0149s00080.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-58	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017432033.1	2e-78	PREDICTED: calmodulin-binding transcription activator 4 isoform X1
Swissprot	Q9FYG2	2e-61	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0L9TLU4	5e-83	A0A0L9TLU4_PHAAN; Uncharacterized protein (Fragment)
STRING	AET04958	6e-81	(Medicago truncatula)
STRING	XP_007158673.1	1e-75	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14241	18	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	8e-64	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]