PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0155s00070.1
Common NameLR48_Vigan08g092500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 175aa    MW: 20492.3 Da    PI: 9.1494
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0155s00070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.61.5e-364102199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++r+kC+++C+lapyfp++++++f +vhk+FG+sn++kl+k+++e++r+++++sl++eA++r+rdP++G +g ++k+ ++++++  e
  Vang0155s00070.1   4 ACAACKHQRKKCSEKCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAREDDRRRVVDSLTWEACCRQRDPIHGPYGEYTKVFNEYKKVLDE 96 
                       7*****************************************************************************************999 PP

            DUF260  94 lallke 99 
                       l++ ++
  Vang0155s00070.1  97 LKRFRS 102
                       998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.823104IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-344100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MHPACAACKH QRKKCSEKCI LAPYFPSNRS REFHAVHKVF GVSNITKLVK NAREDDRRRV  60
VDSLTWEACC RQRDPIHGPY GEYTKVFNEY KKVLDELKRF RSQHQMLQFP SLGFKSVQDK  120
AEEDYLHGKK NAIIDSDIYN SYSSNYLQEF QNLRPEVLIP FHHHSQPYYI TGIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-1959712104LOB family transfactor Ramosa2.1
5ly0_B3e-1959712104LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0155s00070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524391.21e-123LOB domain-containing protein 2
SwissprotQ9LNB96e-38LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A0L9V5741e-129A0A0L9V574_PHAAN; Uncharacterized protein
STRINGXP_007132691.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-40LOB domain-containing protein 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]