PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0164s00420.1
Common NameLR48_Vigan03g190400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 203aa    MW: 22566.8 Da    PI: 9.1295
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0164s00420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17129163135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Vang0164s00420.1 129 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 163
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.451123159IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-14123177IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15125187No hitNo description
Gene3DG3DSA:3.30.50.107.8E-14127161IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.64E-12128175No hitNo description
PROSITE patternPS003440129154IPR000679Zinc finger, GATA-type
PfamPF003202.0E-15129163IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
LMNMNMCQSV SVTTECHQEQ VFAPSCSSSL DDLFSAQNTN FAVPGKARSK RKRLSAPRTK  60
DPLSIWSQHL NPQNEALSSD PPLLKQAYWL ADSELMMPKA KEEQEVRKVV IGECEVEGSS  120
GQQAMARRCS HCLAQRTPQW RAGPLGPKTL CNACGVRYKS GRLLPEYRPA KSPTFVSYLH  180
SNSHKKVMEM RMSVYSSISS DL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0164s00420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417526.11e-118PREDICTED: GATA transcription factor 9-like
TrEMBLA0A0L9U7981e-116A0A0L9U798_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RWU71e-116A0A0S3RWU7_PHAAN; Uncharacterized protein
STRINGXP_007161927.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-44GATA transcription factor 9
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]