PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0171s00210.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 325aa    MW: 37365.7 Da    PI: 9.6347
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0171s00210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.41.3e-1911104290
              FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                       +Y+ +Ak+ GFsvr+ +s+++  ++ + i+k +f C +eg ++++k  +++++r+r+++r++C ak+ ++k+    ++kw+vt +e+ HnH+l
  Vang0171s00210.1  11 CYCLFAKTSGFSVRRGNSYERnkNNIEDIYKIKFICHREGVAKRRKIFEVEKQRKRKSSRCNCSAKFLISKRAfgfEEKWMVTCFENSHNHAL 103
                       799**************999843344679*****************999**********************99999***************99 PP

              FAR1  90 a 90 
                        
  Vang0171s00210.1 104 L 104
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-1811104IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
LFNSDTNAYN CYCLFAKTSG FSVRRGNSYE RNKNNIEDIY KIKFICHREG VAKRRKIFEV  60
EKQRKRKSSR CNCSAKFLIS KRAFGFEEKW MVTCFENSHN HALLDEKEIR FLHAYLDIPI  120
NDQAHILLLS KVGCSVSLIT RVLEAEKGIE AGHLPFSDKD IRNFIKSMRQ KYHNPLMKMS  180
FPIEEHAAST LTSYAFELLQ HEIELSTKYA VEVESLKTKD RVEVTTKELK KVIHYLKDMS  240
EVQENSIDLK HGVLNVDECD VITSKIKGRL KGSRAKGGVE AAKKSRHYHY PNYGGTDHDS  300
QNCPIKRKKD SLLTSQSSPN KYNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15266KRRKIFEVEKQRKRK
26267QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0171s00210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431847.11e-102PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1S3UKG54e-94A0A1S3UKG5_VIGRR; protein FAR1-RELATED SEQUENCE 11-like
STRINGAES987361e-59(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.18e-39FAR1-related sequence 10