PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0171s00210.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 379aa    MW: 44059.4 Da    PI: 8.5178
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0171s00210.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1621.8e-1927120290
              FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                       +Y+ +Ak+ GFsvr+ +s+++  ++ + i+k +f C +eg ++++k  +++++r+r+++r++C ak+ ++k+    ++kw+vt +e+ HnH+l
  Vang0171s00210.2  27 CYCLFAKTSGFSVRRGNSYERnkNNIEDIYKIKFICHREGVAKRRKIFEVEKQRKRKSSRCNCSAKFLISKRAfgfEEKWMVTCFENSHNHAL 119
                       799**************999843344679*****************999**********************99999***************99 PP

              FAR1  90 a 90 
                        
  Vang0171s00210.2 120 L 120
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1727120IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.829232280IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-6252278IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-4255282IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
LLEGAYGNDS TLYKGKLFNS DTNAYNCYCL FAKTSGFSVR RGNSYERNKN NIEDIYKIKF  60
ICHREGVAKR RKIFEVEKQR KRKSSRCNCS AKFLISKRAF GFEEKWMVTC FENSHNHALL  120
DEKEIRFLHA YLDIPINDQA HILLLSKVGC SVSLITRVLE AEKGIEAGHL PFSDKDIRNF  180
IKSKYHNPLM KMSFPIEEHA ASTLTSYAFE LLQHEIELST KYAVIVIDND SYSVRHHTKL  240
DGGRSVTWIK EKSSIHCSCK QFEFSRILCR HVIRVLLKND YFSIPEEYLP SQWRRESSLI  300
PQSRHIINYN DNSSVEFRSL VQCLEVESLK TKDRVEVTTK ELKKVIHYLK DMSEVQENSI  360
DLKHGVLNVD ECDVSYHF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16882KRRKIFEVEKQRKRK
27883QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0171s00210.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431847.11e-108PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1S3UKG51e-100A0A1S3UKG5_VIGRR; protein FAR1-RELATED SEQUENCE 11-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-40FAR1-related sequence 10