PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0174s00140.1
Common NameLR48_Vigan04g167000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 347aa    MW: 38852.6 Da    PI: 6.1701
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0174s00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.31.2e-130234331374
              GRAS  31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGl 123
                       +s +g+p qR+aay++e+Laarla+s++++ykal+++e +   ss++laa+++++ev+P++kf++++aN+aI eav+ +  +HiiDfdi+qG 
  Vang0174s00140.1   2 VSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFIAANNAITEAVKDDMNIHIIDFDINQGS 91 
                       799************************************9...9************************************************* PP

              GRAS 124 QWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                       Q+++L+q+LasR+++pp +R+Tgv++pes+  s   l+++g+rL+k+Ae+lg+pfef++ va+r++ +++++L+++pgEal+Vn+++qlh+++
  Vang0174s00140.1  92 QYINLIQTLASRSSKPPYVRLTGVDDPESVqrSVGGLKNIGQRLEKLAEALGLPFEFRA-VASRTSIVTPSMLNCSPGEALVVNFAFQLHHMP 183
                       ****************************9999999************************.7******************************** PP

              GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                       desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+++lpres++r++vEr++l+r+ivnvvaceg++r+e
  Vang0174s00140.1 184 DESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNVVACEGEDRIE 276
                       ********************************************************************************************* PP

              GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       r e ++kWr+r+++aGF++ p+s++++++++ l++ ++ d y+++ee g+l +gW+d++L+++SaW+
  Vang0174s00140.1 277 RYEVAGKWRARITMAGFTSSPMSTNVTDEIRNLIKVMYCDRYKIKEEMGALHFGWEDKNLIVASAWK 343
                       **************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.411323IPR005202Transcription factor GRAS
PfamPF035144.2E-1282343IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVSIQGEPSQ RIAAYMVEGL AARLAESGKS IYKALRCKEP PSSDRLAAMQ ILFEVCPCFK  60
FGFIAANNAI TEAVKDDMNI HIIDFDINQG SQYINLIQTL ASRSSKPPYV RLTGVDDPES  120
VQRSVGGLKN IGQRLEKLAE ALGLPFEFRA VASRTSIVTP SMLNCSPGEA LVVNFAFQLH  180
HMPDESVSTV NERDQLLRLV KSLNPKLVTV VEQDVNTNTT PFLPRFVEAY NYYSAVFESL  240
DVTLPRESQD RMNVERQCLA RDIVNVVACE GEDRIERYEV AGKWRARITM AGFTSSPMST  300
NVTDEIRNLI KVMYCDRYKI KEEMGALHFG WEDKNLIVAS AWKLPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-66634653381Protein SCARECROW
5b3h_A3e-66634652380Protein SCARECROW
5b3h_D3e-66634652380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0174s00140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422701.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0L9UFZ70.0A0A0L9UFZ7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RDG90.0A0A0S3RDG9_PHAAN; Uncharacterized protein
STRINGXP_007137518.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]