PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0184s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 137aa    MW: 15278.5 Da    PI: 10.8682
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0184s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP49.98.4e-1656864777
                      SSEEETTT--SS--S-STTTT-------S-- CS
               SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77
                      +rfhelsefD++krsCrrrLa hnerrrk++
  Vang0184s00010.1 56 GRFHELSEFDDAKRSCRRRLAVHNERRRKNS 86
                      7****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-61319IPR004333Transcription factor, SBP-box
PROSITE profilePS5114112.9131485IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.7E-65572IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-115689IPR004333Transcription factor, SBP-box
PfamPF031104.8E-95684IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
LMVACCVVKR RSATRICMRP SNTTGGTRCV SVMPRLRLCL FMAPNNGSVS NVAGLGRFHE  60
LSEFDDAKRS CRRRLAVHNE RRRKNSCDQS QAEGSSHHKG SEVPQMKDIA CGQANDRGRT  120
HITIQENSAY KKFQIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0184s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-133AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424410.12e-51PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLA0A0L9UMD81e-48A0A0L9UMD8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SHK15e-50A0A0S3SHK1_PHAAN; Uncharacterized protein
STRINGXP_007149828.13e-41(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.24e-15squamosa promoter binding protein-like 4