PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g00140.1
Common NameLR48_Vigan03g138600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 510aa    MW: 55854.2 Da    PI: 8.1746
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-1661107248
                      SSS-.HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWT.teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g WT +eEd+++v++v+++G+  W++Ia+ ++ gR +kqc++rw+++l
   Vang01g00140.1  61 GGWTaQEEDDKIVELVTKYGPTKWSLIAQSLP-GRIGKQCRERWHNHL 107
                      567735899***********************.*************97 PP
2Myb_DNA-binding51.42.5e-16113156146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a++ +G++ W+ Ia+ +  gRt++ +k++w++
   Vang01g00140.1 113 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLH-GRTDNAIKNHWNS 156
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4555107IPR017930Myb domain
SuperFamilySSF466898.6E-656100IPR009057Homeodomain-like
SMARTSM007174.5E-1359109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2463114IPR009057Homeodomain-like
CDDcd001675.06E-1463107No hitNo description
PfamPF139212.3E-1566122No hitNo description
SuperFamilySSF466897.52E-2886163IPR009057Homeodomain-like
PROSITE profilePS5129425.816108162IPR017930Myb domain
SMARTSM007177.3E-15112160IPR001005SANT/Myb domain
CDDcd001671.10E-11115158No hitNo description
Gene3DG3DSA:1.10.10.603.4E-22115162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MADVVKSEEC CQENKQSTAA SCSSVSEGSG SAIHKSPGIC SPASTSPSHR RTTGPIRRAK  60
GGWTAQEEDD KIVELVTKYG PTKWSLIAQS LPGRIGKQCR ERWHNHLNPE IKKDAWTLEE  120
ELALMNAHRI HGNKWAEIAK VLHGRTDNAI KNHWNSSLKK KLDFYLATGR LPPIPKSSPQ  180
VTVKDTIRRS ASKSILVYSN KELNAAVETS SETTAISKLD DSGRNQFESS GTVREVGDSS  240
SVPANESADS DCVECKPESS NIDLSCSNSE QVSKANWAIT YGPRPDNSGL NGNSTFEHCT  300
SNGNMSTTRL IGTSLQESPT CGSLCYEPPQ LHGSVPIDSL YLNYICQQNE FCSSPTLSPL  360
GFFTPPRVKG DELCTDTPES ILKRAANTFP NTPSILRRRK TGFQALTSPS KVLKVDNDTR  420
SSNETERTND DSGSRHFSRS PASHGNVIDI SGNKTFNASP PYRLRSKRTG IVKSVEKQLE  480
FAFDKEKNDD KKSNVMTEDC LHEKKLVAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-44591636109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g00140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418575.10.0PREDICTED: myb-like protein A
RefseqXP_017418576.10.0PREDICTED: myb-like protein A
TrEMBLA0A0L9U6H00.0A0A0L9U6H0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RV200.0A0A0S3RV20_PHAAN; Uncharacterized protein
STRINGXP_007140316.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-104myb domain protein 3r-3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]