PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g00220.1
Common NameLR48_Vigan03g137300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 203aa    MW: 23173.9 Da    PI: 8.2203
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g00220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-20766357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++t+eql +Leel+++  r+psa+++++++++l    +++ ++V++WFqN++a++++
  Vang01g00220.1  7 SRWSPTTEQLMILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 66
                    7*****************99*************************************996 PP
2Wus_type_Homeobox118.23.6e-38667364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++RW+Pt+eQ++iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk
     Vang01g00220.1  6 SSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67
                       79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.592267IPR001356Homeobox domain
SMARTSM003894.5E-4471IPR001356Homeobox domain
PfamPF000465.3E-18766IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-8766IPR009057Homeodomain-like
SuperFamilySSF466893.68E-11767IPR009057Homeodomain-like
CDDcd000863.49E-4867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSPAGSSRWS PTTEQLMILE ELYRSGIRTP SASQIQQITT HLSFYGRIEG KNVFYWFQNH  60
KARDRQKLRR KLTKQLQLQQ QQLQLHHCQL TPDITNHFFA YSPSSSTQDF PFYNPPTFLF  120
QGGSSNTSEQ ALNCAWNVHN LQSNLVARED VTFYNNGWST PVDVNNQPSS CCTSRPLKTL  180
DLFPLTTTRT DEDCTAPPPK EL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g00220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417967.11e-150PREDICTED: WUSCHEL-related homeobox 3
TrEMBLA0A0L9U5F41e-149A0A0L9U5F4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RV621e-149A0A0S3RV62_PHAAN; Uncharacterized protein
STRINGXP_007140303.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.19e-36WOX family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]