PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g02180.1
Common NameLR48_Vigan07g016800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 344aa    MW: 39175.2 Da    PI: 7.7175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g02180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.2e-33193250259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Vang01g02180.1 193 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSFQDPSIVITTYEGQHNHH 250
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-35177252IPR003657WRKY domain
SuperFamilySSF1182904.58E-29185252IPR003657WRKY domain
PROSITE profilePS5081132.179187252IPR003657WRKY domain
SMARTSM007745.6E-39192251IPR003657WRKY domain
PfamPF031062.5E-26193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
LALFFFSILL SSMANEKDRF YDPFHYNHHE HQLNHSSNFP FFRDNNSTPI ASQNFQGFDH  60
HHHNPSHQRT TFTDCLHGSM DYNTLSRAFD MSCSSSEVLS SIDENPKKPS AGDSAGISGN  120
QSTPNSSVSS SSNEAEALIE EDSTKSQKKD KQPKGCEDEE EKPKKENKPK KKEKKPREPR  180
FAFLTKSEID NLEDGYRWRK YGQKAVKNSP YPRSYYRCTS QKCSVKKRVE RSFQDPSIVI  240
TTYEGQHNHH CPATLRGSAA TMLSAPPFFG SSYMGSSLPQ DFLAQFLPSY TQSDHQNPMF  300
NQNLSNNLHL QPQQHQQHQF QLPRDYGLLQ DLLPSSFPGK QEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-271852531078Probable WRKY transcription factor 4
2lex_A4e-271852531078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174KPKKKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g02180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429720.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A0L9UVB60.0A0A0L9UVB6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJT90.0A0A0S3RJT9_PHAAN; Uncharacterized protein
STRINGXP_007141406.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-49WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]