PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g02790.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 108aa MW: 12294.2 Da PI: 6.2224

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g02790.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	29.6	1.9e-09	12	56	57	101
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 m +++ + r++dPvyG+vg+i+kl +q+++++ ela++++++ Vang01g02790.1 12 SMVAVMLGKCFRIQDPVYGCVGIISKLYEQIHNTEIELAQIQTQI 56 6788888899*****************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.4E-6	12	53	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MILKDLLLFT KSMVAVMLGK CFRIQDPVYG CVGIISKLYE QIHNTEIELA QIQTQITCHK 60 LQLLHPNNAE TNFNLLPTAE AQSNFQIPPE SNNPPQFQWP NQVPWFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g02790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-142	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017428476.1	1e-56	PREDICTED: LOB domain-containing protein 24-like
TrEMBL	A0A0L9UVH4	2e-55	A0A0L9UVH4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RJM4	2e-55	A0A0S3RJM4_PHAAN; Uncharacterized protein
STRING	XP_007142295.1	6e-38	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	8e-10	LOB domain-containing protein 31