PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g04300.1
Common NameLR48_Vigan07g036300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 234aa    MW: 26459.1 Da    PI: 6.3961
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g04300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind75.78.4e-243694260
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                    Fl+k+y++++d+ +++++sw +++++fvv  + efa+++Lp+yFkh+nf+SFvRQLn+Y
  Vang01g04300.1 36 FLTKTYQLVDDPLTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTY 94
                    9********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-262794IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-2432108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-213594IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-143659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-203697IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-147486IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-148799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
LEAAALFGSV MAFTLDRCED SMVFTMDSQK SVPAPFLTKT YQLVDDPLTD HIVSWGDDET  60
TFVVRRPPEF ARDLLPNYFK HNNFSSFVRQ LNTYLLQPDE NLCWIDTPPL PSPKAGNDIL  120
TALSEDNQRL RRKNFMLLSE LTHMKNLYND IIYFIQNHVS PASYEQRSSS AILKLVELES  180
SPQSRNLIRA AKSHIMEKSL VSSSDEANGS VKLFGVPLCG KKRLHPGNLH QQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-1526941178Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g04300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429503.11e-156PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ7XHZ09e-39HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A0L9UVT91e-155A0A0L9UVT9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJT81e-155A0A0S3RJT8_PHAAN; Uncharacterized protein
STRINGXP_007141514.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-39heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]