PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g04940.1
Common NameLR48_Vigan07g060000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 691aa    MW: 75385 Da    PI: 7.138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g04940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06276296526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ GtC+  d+C +aHg
  Vang01g04940.1 276 PCPEFRK-GTCQKADSCEYAHG 296
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.77E-1628165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.0E-1631180IPR020683Ankyrin repeat-containing domain
PfamPF127962.0E-876142IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.65376185IPR020683Ankyrin repeat-containing domain
SMARTSM002480.009676106IPR002110Ankyrin repeat
CDDcd002042.73E-1378174No hitNo description
PROSITE profilePS5008811.568111146IPR002110Ankyrin repeat
SMARTSM002480.023111143IPR002110Ankyrin repeat
SMARTSM003563.0E-4271297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.371271298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001276297IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.103306330IPR000571Zinc finger, CCCH-type
SMARTSM0035630306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MCSDSKSKLS SPSLVMENNI QKQNLDCFRN FSALLELSAS DDFEAFKREV DEKGIDINEA  60
GFWYGRRIGS KKMGSETRTP LMIASLFGSI KVLKYILEAG TVDVNRACGS DMATALHCAA  120
SGGSESSHEI VKLLLDAGAD AESLDATGNR PANLIAPAFD SSSKSRRKAM ELLLRGGERD  180
ELVSQEMELQ IFSASLSAKE GSEKKEGSDK KEYPVDISLP DINNGVYGSD EFRMYSFKVK  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY PYSCVPCPEF RKGTCQKADS CEYAHGVFES  300
WLHPAQYRTR LCKDETGCTR KVCFFAHKPE ELRPVYASTG SAMPSPKSYS SSALDMTSMS  360
PLALSSTSLP MPTVSTPPMS PLAAASSPKS GSLWQNKINL TPPSLQLPGS RLKAALSARD  420
LEMEMELLGL DSPVRQQQQQ QQQQLIEEIA RISSPSFRNK EFNRIGDLNP TNLDGLLAAA  480
DPSVLSQLHG LSVQPSTPTQ TGLQMRQNMN HLRASYPSNI PSSPVRKPSA FGFDSSAAVA  540
AAVMNSRSAA FAKRSQSFID RGASTHHLGL SSPSNPSCRV SSTLSDWSSP TGKLDWGVNG  600
DELNKLRKSA SFGFRNNGVT ASPMAQHEHV EPDVSWVHSL VKDVPSERSE MFGGDLSKEM  660
LPPWVEQLLI GCVAERKSNG PLKVVESLVE *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g04940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430643.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0L9UVY50.0A0A0L9UVY5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RKP90.0A0A0S3RKP9_PHAAN; Uncharacterized protein
STRINGXP_007141759.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-171C3H family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]