PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g05040.1
Common NameLR48_Vigan07g059100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 222aa    MW: 25450.7 Da    PI: 9.7476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g05040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181055147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed +l+++v+q+G ++W++I++ ++ gR++k+c++rw + 
   Vang01g05040.1 10 KGSWSPQEDAILLKLVNQYGARNWSLISSSIP-GRSGKSCRLRWCNQ 55
                     799*****************************.***********985 PP
2Myb_DNA-binding491.4e-1564106347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T  Ed+++++a++ +G++ W+t +r ++  Rt++ +k++w++ 
   Vang01g05040.1  64 PFTSTEDQIIIKAHAIHGNK-WATLSRLLP-SRTDNAIKNHWNST 106
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.059560IPR017930Myb domain
SuperFamilySSF466891.65E-297103IPR009057Homeodomain-like
SMARTSM007171.8E-16958IPR001005SANT/Myb domain
PfamPF002494.0E-181055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-251163IPR009057Homeodomain-like
CDDcd001672.36E-141254No hitNo description
SMARTSM007178.2E-1361109IPR001005SANT/Myb domain
PROSITE profilePS5129419.23461111IPR017930Myb domain
CDDcd001673.41E-964107No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2164110IPR009057Homeodomain-like
PfamPF002491.2E-1264106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTDVGNDRVK GSWSPQEDAI LLKLVNQYGA RNWSLISSSI PGRSGKSCRL RWCNQLNPEV  60
QHRPFTSTED QIIIKAHAIH GNKWATLSRL LPSRTDNAIK NHWNSTLRRR STMSQLSSAA  120
SPNTKRASPL EWDYPFKKQH AEKEREEIPV ITPLSLFPSS EKSDGELEEG EKRVAEENKI  180
SNQDYFLKIM RRMIADEVSN YLHTLYKGRE YSLDHPPNLH K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-3871104107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g05040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428535.11e-165PREDICTED: transcriptional activator Myb-like
SwissprotO231606e-52MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0L9UWD21e-163A0A0L9UWD2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RKP21e-163A0A0S3RKP2_PHAAN; Uncharacterized protein
STRINGXP_007141751.13e-88(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-54myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]