PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g05740.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 194aa    MW: 21442.2 Da    PI: 9.5767
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g05740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC31.34.4e-1022541950
           NF-YC 19 helPlarikkilka.dedvkmisaeaPvllska 50
                    h++Pl+ri ki+k+  +d kmis eaP+++s+a
  Vang01g05740.1 22 HSFPLTRIEKIMKKsRDDAKMISGEAPIIFSNA 54
                    89**********8615789************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.77E-71656IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.2E-102055IPR009072Histone-fold
PfamPF008085.9E-62355IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRQAGVYSRL LCGGVLGRTG PHSFPLTRIE KIMKKSRDDA KMISGEAPII FSNALVRDGG  60
NVLHSSSVNT PFTTATTTRI TTGKITSNTS DFTYVRSPEE QPSVGVSKLL RNKRENNYFA  120
PSPGKSNIRG ADTPEDVHYF VEEPGFGNGA QQVIREWDRI RVARTLSFDD CMKELAKAGV  180
GKQYWGYVID YSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g05740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150365e-90AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.