PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g06220.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 130aa    MW: 14282 Da    PI: 6.7468
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g06220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1263e-0870128274
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                     fYneYA++vGFs +  ++ +sk  ge +  +fvC +e  +++   +              C+a+++++k+ ++
  Vang01g06220.1  70 FYNEYARRVGFSCKAGAKGRSKAIGENMYCEFVCGREDLKRKLAGS--------------CNAMIRIEKKGQN 128
                     ***********************************99888776555..............6666666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-570115IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
LIKACNFCYI QMINMGEGSD HQAMADDGNV EHIGGGVNKA ENNSGSHVEV GVSEPYVGRE  60
FDSEDAAKTF YNEYARRVGF SCKAGAKGRS KAIGENMYCE FVCGREDLKR KLAGSCNAMI  120
RIEKKGQNNW
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g06220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430307.11e-81PREDICTED: protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A0L9UV262e-80A0A0L9UV26_PHAAN; Uncharacterized protein
STRINGXP_007141585.14e-70(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.29e-18FAR1-related sequence 3