PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g06430.1

Common Name

LR48_Vigan07g057300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 155aa MW: 17006.5 Da PI: 6.4871

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g06430.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.4	1.4e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C+kdC++apyfp+e+p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA ar+rdPvyG+vg i+ lq+q++ l+ +la Vang01g06430.1 6 PCASCKLLRRRCTKDCIFAPYFPSEEPQKFAIVHKVFGASNVSKMLQELPVQQRTDAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLQMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Vang01g06430.1 101 VAQAE 105 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.861	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCTKD CIFAPYFPSE EPQKFAIVHK VFGASNVSKM LQELPVQQRT 60 DAVSSLVYEA SARVRDPVYG CVGAISYLQN QVADLQMQLA VAQAEILCLQ MENESLIPIS 120 ETDLHQKSYL LQNNFSQLLD FNTSNSKDKV GGGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-50	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-50	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g06430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-160	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017428530.1	1e-105	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-69	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0L9UWF2	1e-104	A0A0L9UWF2_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RKF9	1e-104	A0A0S3RKF9_PHAAN; Uncharacterized protein
STRING	GLYMA14G06140.1	2e-85	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-71	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]