PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g08540.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 137aa MW: 15185.7 Da PI: 8.0477

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g08540.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136	1.4e-42	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C++dC+lapyfp+++ kfa+vhk+FG sn++k+lk++p e+r da++slvyeA+ar+r+PvyG+vg+i+kl+ q+++l+ +la Vang01g08540.1 20 PCASCKLLRRRCSPDCILAPYFPSNDLCKFAMVHKVFGCSNITKILKNVPVEQRGDAVRSLVYEANARIRNPVYGCVGIISKLETQVSELQMQLA 114 7********************************************************************************************** PP DUF260 96 llkee 100 +++ee Vang01g08540.1 115 VVEEE 119 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.238	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-42	20	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MLHAGQHRFL DFEMGGTSSP CASCKLLRRR CSPDCILAPY FPSNDLCKFA MVHKVFGCSN 60 ITKILKNVPV EQRGDAVRSL VYEANARIRN PVYGCVGIIS KLETQVSELQ MQLAVVEEEI 120 LSIKMQQEFI FTNGGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-40	16	121	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-40	16	121	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g08540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-116	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017428643.1	1e-85	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	4e-55	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0L9UWX9	8e-86	A0A0L9UWX9_PHAAN; Uncharacterized protein
STRING	XP_007142160.1	2e-72	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-57	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]