PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g08600.3
Common NameLR48_Vigan07g106300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 117aa    MW: 13072.4 Da    PI: 8.9156
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g08600.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.35e-337971100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+C+++C++apyfp ++ +kfa+vhk+FG +n++k+l+         +++slvyeA+ar+r+PvyG+vg+i++l+ q+++l+++la
  Vang01g08600.3   7 PCASCKLLRRRCSQNCIFAPYFPPNDLHKFAMVHKVFGCKNLTKMLD---------IVKSLVYEANARVRNPVYGCVGLISNLEIQVSELQTQLA 92 
                     7********************************************95.........69************************************* PP

          DUF260  96 llkee 100
                     ++++e
  Vang01g08600.3  93 VAQAE 97 
                     *9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.382698IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-32795IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSVNCSPCAS CKLLRRRCSQ NCIFAPYFPP NDLHKFAMVH KVFGCKNLTK MLDIVKSLVY  60
EANARVRNPV YGCVGLISNL EIQVSELQTQ LAVAQAEILT MKMQQEFTFN NGRISP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3569910112LOB family transfactor Ramosa2.1
5ly0_B1e-3569910112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g08600.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-105AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428642.12e-79PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW37e-50LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0L9UXT45e-78A0A0L9UXT4_PHAAN; Uncharacterized protein
STRINGXP_007142160.19e-58(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-52LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]