PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g09040.1
Common NameLR48_Vigan10g277700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 237aa    MW: 26687 Da    PI: 8.9345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g09040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-103175345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+eE +l+ +a + + ++   +W+++a++++ g+t  +++  + 
   Vang01g09040.1 31 KWTPEENKLFENALAVHDKDtpdRWHKVAEMIP-GKTVLDVIKQYK 75
                     8********************************.****99998875 PP
2Myb_DNA-binding41.43.3e-13136179346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE++l++ + k++G+g+W+ I+r +   Rt+ q+ s+ q+
   Vang01g09040.1 136 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVISRTPTQVASHAQN 179
                      8*****************************99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-52073IPR009057Homeodomain-like
PROSITE profilePS5129311.2752782IPR017884SANT domain
SuperFamilySSF466896.61E-122877IPR009057Homeodomain-like
SMARTSM007175.2E-112880IPR001005SANT/Myb domain
PfamPF002494.8E-93176IPR001005SANT/Myb domain
CDDcd001675.16E-93177No hitNo description
PROSITE profilePS5129415.507129185IPR017930Myb domain
SuperFamilySSF466891.29E-13130179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-14132179IPR006447Myb domain, plants
SMARTSM007175.5E-11133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-12133176IPR009057Homeodomain-like
CDDcd001672.09E-10136179No hitNo description
PfamPF002491.9E-11136179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
LMKWETVALS PTPCSPNSNT NWLLENNRST KWTPEENKLF ENALAVHDKD TPDRWHKVAE  60
MIPGKTVLDV IKQYKELEID VSNIEAGLIP VPGYSTATSP FTLDWVNSPG YDGFKGSGKR  120
SSSARPHEQE RKKGVPWTEE EHKLFLLGLK KYGKGDWRNI SRNFVISRTP TQVASHAQNT  180
GIAMTFNPAH ERVFMSPYGA NSFGVKMEAR NLHNESSYLG PQTQNIVFQM QQSSQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-16321041183RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g09040.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440370.11e-130PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H74e-81DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0L9VPB21e-129A0A0L9VPB2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RLY11e-129A0A0S3RLY1_PHAAN; Uncharacterized protein
STRINGXP_007142227.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-70MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]