PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g09790.1
Common NameLR48_Vigan07g183500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 555aa    MW: 61943.4 Da    PI: 4.8317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g09790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-52211471127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+++yL+ k++g+  ++  vi+e+d++k+ePwdLp  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd++++
  Vang01g09790.1  21 LPLGFRFRPTDEELIDYYLRSKINGNGDDV-WVIREIDVCKWEPWDLPdlSVVRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIK 114
                     699************************999.89**************96447777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                     s +++l+g+kktLvfy+grapkg++t+Wvmheyr
  Vang01g09790.1 115 S-GSALIGMKKTLVFYTGRAPKGKRTNWVMHEYR 147
                     *.9******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6114171IPR003441NAC domain
PROSITE profilePS5100556.27221171IPR003441NAC domain
PfamPF023658.4E-2822147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MGAVVECYPP PRTAVLSLNT LPLGFRFRPT DEELIDYYLR SKINGNGDDV WVIREIDVCK  60
WEPWDLPDLS VVRNKDPEWF FFCPQDRKYP NGHRLNRATT HGYWKATGKD RKIKSGSALI  120
GMKKTLVFYT GRAPKGKRTN WVMHEYRPTL KELDGTNPGQ NPYVLCRLFK KHDETLEGSN  180
GEDVERTAST PMTANHSPDE IQSDSSLDPA SSSQITEGEK PLTVIHENSE EAISNIITAV  240
DSHSDGCDAP DVQNQIVKPA AEQDQPFNFE DFYDPTNQQL DDKLFSPVHA HFPPEIYYQS  300
ELQYGTNDNI PDLFDSVNWD AISYDTSSLE LGSSFLNVRD NGSGSDSDVE MANMTNLQAL  360
HGYPNEAVEK KSNVGLFQST PQMAFSNDGY MGQVDDPIKN SGQLRDFDTF VNGDTGIRIR  420
ARQGRNEQPN MNGMVQSQGN APRRIRLLVE RQFASEKAAK DGSCASAPEE HNSKTTISRE  480
WNASENHATD ESSGSCDDVD VATAESFISK ESRRGHHSSK VSSNRGMWSY VLAVSATVLV  540
SVTVIVNIWA YLRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-44121747171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g09790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430850.10.0PREDICTED: protein NTM1-like 9 isoform X1
TrEMBLA0A0L9UZJ90.0A0A0L9UZJ9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RLR70.0A0A0S3RLR7_PHAAN; Uncharacterized protein
STRINGXP_007141360.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-94NAC transcription factor-like 9
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]