PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g11570.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 376aa    MW: 40838.5 Da    PI: 7.8354
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g11570.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3429.8e-10513721374
            GRAS   1 lvelLlecAeavss..gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lL+++Aea++   ++++la+ +L rl+el ++ +g++++Rlaa+f  AL++ l +   + ++++++ +    n +++l+a++l++++sP++k
  Vang01g11570.2   1 LVHLLMAAAEALTPgtESHHLARVILVRLNELvSTTHGTNIERLAAHFSSALQNLLDG--AGSAHSITTDTP---NPTDTLTAFHLLQDMSPYVK 90 
                     68**********97336777************666788*******************9..444444444444...58999*************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlv 182
                     f+h+taNqaIleav++e+rvHi+Dfd+++G+QW++L+q+L+sR+ gpp  +lRiT++++ ++    s  +++etg+rL+ fA+++g pf+f+   
  Vang01g11570.2  91 FAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPapHLRITALSRGSAPgrrSIATIQETGRRLTAFAASVGQPFSFHQCR 185
                     ********************************************765555********97766888999************************99 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklp 276
                      +  e++++++L++ +gEal+ n++l+l +l       +    ++Lk  k+l+P+vv vve+e+ + +++ F+  f+++l++ysa+fdsle+++p
  Vang01g11570.2 186 LDPGETFRPSSLKLIRGEALVFNCMLHLPHLS---FRASGSVASFLKGAKELNPRVVMVVEEEVARgGDAGFVGLFMDSLQHYSAVFDSLEVGFP 277
                     99**************************9986...333333456*******************99999*************************** PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsv 370
                      ++ +++ vEr++lg++i n v+   ++     e  ++W+e+l++aGF+ vp+s  + +qa+lll  ++ dgyrvee  ++ lvlgWk+r+L+s+
  Vang01g11570.2 278 MQKWAQALVERVFLGPRIANSVSLMYRS---GGEDRGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFN-DGYRVEEMgNNKLVLGWKSRRLISA 368
                     *************************999...778889********************************.******88699999*********** PP

            GRAS 371 SaWr 374
                     S+W+
  Vang01g11570.2 369 SVWT 372
                     ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.7661352IPR005202Transcription factor GRAS
PfamPF035143.4E-1021372IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
LVHLLMAAAE ALTPGTESHH LARVILVRLN ELVSTTHGTN IERLAAHFSS ALQNLLDGAG  60
SAHSITTDTP NPTDTLTAFH LLQDMSPYVK FAHFTANQAI LEAVAHEKRV HIVDFDVTEG  120
AQWASLMQSL SSRSTGPPAP HLRITALSRG SAPGRRSIAT IQETGRRLTA FAASVGQPFS  180
FHQCRLDPGE TFRPSSLKLI RGEALVFNCM LHLPHLSFRA SGSVASFLKG AKELNPRVVM  240
VVEEEVARGG DAGFVGLFMD SLQHYSAVFD SLEVGFPMQK WAQALVERVF LGPRIANSVS  300
LMYRSGGEDR GSWEEWLGAA GFRGVPVSFA NHCQANLLLG LFNDGYRVEE MGNNKLVLGW  360
KSRRLISASV WTSNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-552237538382Protein SCARECROW
5b3h_A2e-552237537381Protein SCARECROW
5b3h_D2e-552237537381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g11570.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429628.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A0S3RN840.0A0A0S3RN84_PHAAN; Uncharacterized protein
STRINGXP_007141073.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-137GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]