PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g11570.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 322aa    MW: 35030.8 Da    PI: 8.1468
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g11570.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.54.1e-921231868374
            GRAS  68 etseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skee 157
                     +t++ n +++l+a++l++++sP++kf+h+taNqaIleav++e+rvHi+Dfd+++G+QW++L+q+L+sR+ gpp  +lRiT++++ ++    s  +
  Vang01g11570.3  12 TTDTPNPTDTLTAFHLLQDMSPYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPapHLRITALSRGSAPgrrSIAT 106
                     34445689999**********************************************************765555********97766888999* PP

            GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse 251
                     ++etg+rL+ fA+++g pf+f+    +  e++++++L++ +gEal+ n++l+l +l       +    ++Lk  k+l+P+vv vve+e+ + +++
  Vang01g11570.3 107 IQETGRRLTAFAASVGQPFSFHQCRLDPGETFRPSSLKLIRGEALVFNCMLHLPHLS---FRASGSVASFLKGAKELNPRVVMVVEEEVARgGDA 198
                     ***********************9999**************************9986...333333456*******************99999** PP

            GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                      F+  f+++l++ysa+fdsle+++p ++ +++ vEr++lg++i n v+   ++     e  ++W+e+l++aGF+ vp+s  + +qa+lll  ++ 
  Vang01g11570.3 199 GFVGLFMDSLQHYSAVFDSLEVGFPMQKWAQALVERVFLGPRIANSVSLMYRS---GGEDRGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFN- 289
                     **************************************************999...778889********************************. PP

            GRAS 347 dgyrveee.sgslvlgWkdrpLvsvSaWr 374
                     dgyrvee  ++ lvlgWk+r+L+s+S+W+
  Vang01g11570.3 290 DGYRVEEMgNNKLVLGWKSRRLISASVWT 318
                     ******88699999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.9611298IPR005202Transcription factor GRAS
PfamPF035141.4E-8912318IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
LLDGAGSAHS ITTDTPNPTD TLTAFHLLQD MSPYVKFAHF TANQAILEAV AHEKRVHIVD  60
FDVTEGAQWA SLMQSLSSRS TGPPAPHLRI TALSRGSAPG RRSIATIQET GRRLTAFAAS  120
VGQPFSFHQC RLDPGETFRP SSLKLIRGEA LVFNCMLHLP HLSFRASGSV ASFLKGAKEL  180
NPRVVMVVEE EVARGGDAGF VGLFMDSLQH YSAVFDSLEV GFPMQKWAQA LVERVFLGPR  240
IANSVSLMYR SGGEDRGSWE EWLGAAGFRG VPVSFANHCQ ANLLLGLFND GYRVEEMGNN  300
KLVLGWKSRR LISASVWTSN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-512232196382Protein SCARECROW
5b3h_A3e-512232195381Protein SCARECROW
5b3h_D3e-512232195381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g11570.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429628.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-162NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A0S3RN840.0A0A0S3RN84_PHAAN; Uncharacterized protein
STRINGXP_007141073.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-119GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]