PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g12090.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C3H

Protein Properties

Length: 867aa MW: 95859.9 Da PI: 8.6062

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g12090.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.2	5.3e-07	159	179	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa+ G C++G+ C+F H+ Vang01g12090.1 159 PCRDFAA-GKCRRGSHCHFLHD 179 8****.***********6 PP
2	zf-CCCH	20	1.2e-06	217	238	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H Vang01g12090.1 217 EACTNFAK-GRCRMGASCKFLHH 238 78****.***********6 PP
3	zf-CCCH	19.3	2e-06	282	302	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC+ffa G C+ G C+F+H+ Vang01g12090.1 282 LCKFFAN-GNCRNGKYCRFSHD 302 98888.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0016	154	180	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.084	154	181	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.5E-6	158	182	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-4	159	179	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.695	213	240	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.0E-4	214	239	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	217	238	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.6E-5	277	303	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.375	277	304	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-6	279	302	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	282	307	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
LVSEMSGSGK KRSSKWDLRV DPEFSPDASK QLRPGWSSAD VAGSNSSKWS YLEGSDQLKP 60 DMGFSSKEPF SGGRSSHKDD VMNKDYGCLD ATMEWDEDGY NKKISPESEE WKPKRHSQSP 120 KNGWSRSVRS RSRSPPHGFR WDSGVSDRNR MRAGGSAQPC RDFAAGKCRR GSHCHFLHDS 180 QNLEDSWENK SRKDGAPRYS VPQDGRDYSL KSGRSNEACT NFAKGRCRMG ASCKFLHHDN 240 SDGHGKVSVD ELNRERDIDR RHRDSSFEQG GGHGPNRSSD TLCKFFANGN CRNGKYCRFS 300 HDRQACRSPN RRLRDDRWAS NPGGDHHRMD RPKLSDSDSP NRRPRDDRWG SDGNKADADE 360 VWDSPKWNDT VAVSDSGKLV EGKSENVGAT EPGFTSLPIR YGWSHSLDKS RVHDEQPFSS 420 DKKEVNSWVS GSTASNIVSQ SIGTDIWLGD TKMSPDWHYR VGSSNTIEEK KHEQNKRGVK 480 QGGMYLATSE RDRIQIAAAQ GTNQNAESLN PLHSSGLQTV GQRQAPVPIL PSKRGIVDGM 540 PNQEVSTEKK YTAEPNIMDA GLSQVSSRNP PPTENLVGQE QLAQLTNLSA SLAHILGTGQ 600 QLPQLYAALN SHYAKDTSSL AKAEVSAVPV SNTFIRSDPA VPVSNTFIHP DPAVGLLKQY 660 DPMCDSVEPK SAAASGLPPS IPPSKRVAED VLEIPSQLSN TSKQNHGDSS KAAGPEELVK 720 SDPLVQLQSS QNTEFGKDDN KEVLPDERHK SRDDPKSTKE NGPLENMEQT GGPDEAKKTK 780 DLKGIRAFKF ALVEFVKELL KPTWKEGQIT KDDYKTIVKK VVDKVTGSMQ GANIPQTQEK 840 IDNYLSFSKP KLNKLVQAYV EKVQKA*

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

LVSEMSGSGK KRSSKWDLRV DPEFSPDASK QLRPGWSSAD VAGSNSSKWS YLEGSDQLKP  60
DMGFSSKEPF SGGRSSHKDD VMNKDYGCLD ATMEWDEDGY NKKISPESEE WKPKRHSQSP  120
KNGWSRSVRS RSRSPPHGFR WDSGVSDRNR MRAGGSAQPC RDFAAGKCRR GSHCHFLHDS  180
QNLEDSWENK SRKDGAPRYS VPQDGRDYSL KSGRSNEACT NFAKGRCRMG ASCKFLHHDN  240
SDGHGKVSVD ELNRERDIDR RHRDSSFEQG GGHGPNRSSD TLCKFFANGN CRNGKYCRFS  300
HDRQACRSPN RRLRDDRWAS NPGGDHHRMD RPKLSDSDSP NRRPRDDRWG SDGNKADADE  360
VWDSPKWNDT VAVSDSGKLV EGKSENVGAT EPGFTSLPIR YGWSHSLDKS RVHDEQPFSS  420
DKKEVNSWVS GSTASNIVSQ SIGTDIWLGD TKMSPDWHYR VGSSNTIEEK KHEQNKRGVK  480
QGGMYLATSE RDRIQIAAAQ GTNQNAESLN PLHSSGLQTV GQRQAPVPIL PSKRGIVDGM  540
PNQEVSTEKK YTAEPNIMDA GLSQVSSRNP PPTENLVGQE QLAQLTNLSA SLAHILGTGQ  600
QLPQLYAALN SHYAKDTSSL AKAEVSAVPV SNTFIRSDPA VPVSNTFIHP DPAVGLLKQY  660
DPMCDSVEPK SAAASGLPPS IPPSKRVAED VLEIPSQLSN TSKQNHGDSS KAAGPEELVK  720
SDPLVQLQSS QNTEFGKDDN KEVLPDERHK SRDDPKSTKE NGPLENMEQT GGPDEAKKTK  780
DLKGIRAFKF ALVEFVKELL KPTWKEGQIT KDDYKTIVKK VVDKVTGSMQ GANIPQTQEK  840
IDNYLSFSKP KLNKLVQAYV EKVQKA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g12090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014504621.1	0.0	zinc finger CCCH domain-containing protein 38
TrEMBL	A0A0S3RN34	0.0	A0A0S3RN34_PHAAN; Uncharacterized protein
STRING	XP_007137708.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4099	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-10	C3H family protein