PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g13410.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 246aa    MW: 27996.2 Da    PI: 6.061
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g13410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61e-11141848
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     Ede l++++k+ G g+W+t +++ g+ R++k+c++rw +yl
   Vang01g13410.1  1 EDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 41
                     9************************99************97 PP
2Myb_DNA-binding47.34.7e-155292648
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   Vang01g13410.1 52 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 92
                     89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.9E-9141IPR001005SANT/Myb domain
PROSITE profilePS5129411.66141IPR017930Myb domain
SMARTSM007170.13143IPR001005SANT/Myb domain
SuperFamilySSF466895.08E-23188IPR009057Homeodomain-like
CDDcd001678.03E-7141No hitNo description
Gene3DG3DSA:1.10.10.601.8E-16148IPR009057Homeodomain-like
PROSITE profilePS5129422.6864296IPR017930Myb domain
SMARTSM007173.2E-134694IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-234993IPR009057Homeodomain-like
PfamPF002497.7E-145292IPR001005SANT/Myb domain
CDDcd001676.17E-125292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
EDEVLANYIK KEGEGRWRTL PKRAGLLRCG KSCRLRWMNY LRPSVKRGHI APDEEDLILR  60
LHRLLGNRWS LIAGRIPGRT DNEIKNYWNT HLRLHAIHHL GQHLQPPVSN PFDNNNISNQ  120
VAAVTDDVSA MGFMDSEDCN DDININYYSD DVFSSFLNSL INEDAFASQQ HHVQTELPSE  180
RCIPLPCDDR VDDPLVSITT ASTSQGYDDD LGVLWESPLV PSTTFTHHVN DPIIKMAHDH  240
HHHNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1919314105B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g13410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027939493.11e-141transcription repressor MYB5-like
SwissprotQ388501e-65MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A4D6MH611e-140A0A4D6MH61_VIGUN; Myb proto-oncogene protein
STRINGXP_007161463.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-64myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]