PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g13710.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 124aa    MW: 14441.4 Da    PI: 10.7584
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g13710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.81.8e-20942134
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                    krien+snrqvt+skR+ngilKKA+E+ vLCda+
  Vang01g13710.1  9 KRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQ 42
                    79******************************97 PP
2K-box13.33.5e-0640651338
           K-box 13 kaeslqqelakLkkeienLqreqRhl 38
                    +a++l+ e+++Lkke++++q e+R +
  Vang01g13710.1 40 DAQNLNGEIERLKKENDSMQIELRTR 65
                    4599****************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-20154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.193142IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-20142IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-151042IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-172338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEITVLCD AQNLNGEIER LKKENDSMQI  60
ELRTRSWRRR TGNLIFSGYQ QRLAVEGARE VENGFDQSVR DYNSHMPFAF RVQPMQPNLQ  120
ERI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g13710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904762e-69BT090476.1 Soybean clone JCVI-FLGm-4H15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504222.11e-55floral homeotic protein GLOBOSA
RefseqXP_017429903.11e-55PREDICTED: floral homeotic protein GLOBOSA-like
RefseqXP_027939831.11e-55floral homeotic protein GLOBOSA-like
SwissprotQ0HA253e-39MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A0L9V1184e-55A0A0L9V118_PHAAN; Uncharacterized protein
STRINGGLYMA14G24590.19e-55(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-27MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]