PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g13970.1
Common NameLR48_Vigan07g227900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 226aa    MW: 24875.4 Da    PI: 5.8423
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g13970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-111850336
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                      W ++Ed++l ++v+++G+ +W++Ia++++ gRt
   Vang01g13970.1 18 HWRKDEDQKLTQLVQEHGPQDWNAIAQHIQ-GRT 50
                     5*****************************.**9 PP
2Myb_DNA-binding43.95.5e-145089647
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     teE+e+l+ a + +G + W+tIa+ +  gRt++ +k++w+ +
   Vang01g13970.1 50 TEEEERLIAAREVYGAK-WATIAKLFE-GRTDNALKNHWHVL 89
                     8****************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.6E-171386IPR009057Homeodomain-like
SMARTSM007175.71549IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-111851IPR009057Homeodomain-like
PfamPF002494.0E-111852IPR001005SANT/Myb domain
CDDcd001671.05E-101953No hitNo description
PROSITE profilePS5129415.1464394IPR017930Myb domain
SMARTSM007172.7E-55092IPR001005SANT/Myb domain
CDDcd001671.43E-95190No hitNo description
Gene3DG3DSA:1.10.10.602.4E-125290IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDNSPSAAQN MPNYRVNHWR KDEDQKLTQL VQEHGPQDWN AIAQHIQGRT EEEERLIAAR  60
EVYGAKWATI AKLFEGRTDN ALKNHWHVLI ARKRKEGNNG SLQELMNGSS SSSSHDDALF  120
DMMNFNATQR ALAPVCPSDS LSPMNFGSVP SFSDSFPGKE ESDPFGLLNP AATSGGMMKK  180
GLFHSSSSAF TKFKGSSSSD RKEPHDAGFK DVTFYDFLGV GADDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1811932107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g13970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428877.11e-159PREDICTED: myb-related protein 305-like
TrEMBLA0A0L9V0E31e-157A0A0L9V0E3_PHAAN; Uncharacterized protein
STRINGXP_007161388.11e-101(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2020555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.17e-32myb domain protein 110
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]