PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g14250.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 408aa    MW: 47873.9 Da    PI: 8.2051
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g14250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08198241147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + rWT+eE e l ++ +q+G++ W+ +a  +g  + + ++k+ w+ +
   Vang01g14250.1 198 KRRWTPEEYEFLRKVKEQHGSN-WRQVADALG--KNRIHVKDAWRRV 241
                      579*****************99.********9..6788899988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.056124195IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-5124185IPR009057Homeodomain-like
PROSITE profilePS512949.765193246IPR017930Myb domain
SMARTSM007179.9E-4197244IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-10198259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-10200252IPR009057Homeodomain-like
PfamPF139212.4E-12201259No hitNo description
PROSITE profilePS500907.584243312IPR017877Myb-like domain
SMARTSM007170.0024247314IPR001005SANT/Myb domain
CDDcd001670.00559250309No hitNo description
Gene3DG3DSA:1.10.10.607.0E-8253314IPR009057Homeodomain-like
SuperFamilySSF466896.5E-8292370IPR009057Homeodomain-like
PROSITE profilePS500908.153314367IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.2E-4315368IPR009057Homeodomain-like
SMARTSM007179.2318369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MVERVLDMQM KKKKKSDTER QHDDYNEFKS NEDKDDSQYK MKEWKKKTLM EVGKSKEYNE  60
FERNEGEGED DAHNSKSKDK NIMTKKKAKE DNGDSSNPEH TVLSKPKRVT FSDQVDVCCD  120
GLVRGKRFTP EEDEQVKSAV YNFIESRGLG DEGLDMVLHC QAHREIRHCW KEIAAALPHR  180
PVYSVYTRAH ILFERGEKRR WTPEEYEFLR KVKEQHGSNW RQVADALGKN RIHVKDAWRR  240
VKLRNTNKGR WTQEEYQKLF DLVNLDLRVS ASQGYRKSKH GMLRDNIGWE AIGEKLATRN  300
SVSCCHKWYD KLRSPMVATG AWSDTDDYRL VDALYNLDAC CMEEVDWDNL LEHRTGEACR  360
KRWNQIVRYI GEHGGKPFAE QVEILAKRYC PNLLQEREAF DAKPLVC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g14250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430357.10.0PREDICTED: RNA polymerase I termination factor-like isoform X2
TrEMBLA0A0L9V1I00.0A0A0L9V1I0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RNM10.0A0A0S3RNM1_PHAAN; Uncharacterized protein
STRINGGLYMA13G19060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-120MYB_related family protein