PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g14360.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 981aa    MW: 107888 Da    PI: 6.0775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g14360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-173783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd++l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   Vang01g14360.1 37 KGQWTLEEDDILRKAVEKFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding49.31.1e-1589131144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +g+W++eEd++++++v++ G + W++ ar+++ gR +kqc++r+
   Vang01g14360.1  89 KGPWSKEEDDIIIELVNKNGAKKWSSLARHLP-GRIGKQCRERY 131
                      79******************************.**********9 PP
3Myb_DNA-binding49.88e-16162204145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l+++++ +G++ W+  +++++ gRt++ +k++w+
   Vang01g14360.1 162 KEAWTQEEELALIHYHQIFGNK-WAELSKYIP-GRTDNAIKNHWN 204
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.2073287IPR017930Myb domain
SuperFamilySSF466891.15E-153390IPR009057Homeodomain-like
SMARTSM007173.9E-153685IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-223891IPR009057Homeodomain-like
PfamPF139218.5E-164097No hitNo description
CDDcd001675.10E-144083No hitNo description
SuperFamilySSF466899.54E-2586203IPR009057Homeodomain-like
PROSITE profilePS5129418.29288142IPR017930Myb domain
SMARTSM007171.7E-1388137IPR001005SANT/Myb domain
CDDcd001674.07E-1391135No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2092157IPR009057Homeodomain-like
PROSITE profilePS5129424.574157211IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-22158211IPR009057Homeodomain-like
SMARTSM007174.2E-15161209IPR001005SANT/Myb domain
PfamPF002493.1E-14162205IPR001005SANT/Myb domain
CDDcd001672.08E-11164204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MDSDRSVSAP SHGQVDGTQR VKALHGRTTG PTRRSTKGQW TLEEDDILRK AVEKFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDDII IELVNKNGAK KWSSLARHLP  120
GRIGKQCRER YGYWIVAIFP IELHLAGVLG MWVNHLDPTI KKEAWTQEEE LALIHYHQIF  180
GNKWAELSKY IPGRTDNAIK NHWNSSVKKK LDSYLTSGVL NQFEPVPHVG NSNQSTRLQC  240
SGDDNCSKGI KREEISESSQ GSANAVCFPS ARGMSSTELQ TGEATCRPNE ECNLRKDHSP  300
SQASYSEPYY VSIDDVSICI PEISHQEACT SQFIEQQSHE LGNSITGDRH FNLHSLPNVS  360
SMVVGQDSSQ LHRDCVASSE ICDMVNVPFR PSKALGASTS MVPASLGSLK PEHVLISDDE  420
CCRVLFSDSI NDGSFPPVDY IKGEETVKFS GCTSFRCQSC NIQISETGGS STPHLTCPRC  480
SNNYQGTSSS LSNPPVLSAR DDREGPTAND NHLYGEDGQQ LVSTAPANLT HVNYISSSPC  540
VDGMGTVVME EPREENTNVH TEKEDSGSLC YEPPRFPSLD IPFFSCDLVQ SGSDMQQEFS  600
PLGIRQFMMS SMNCLTPFKL WDSPSHGDSP DALLKSAAKT FTGTPSILKK RHRDLLSPLS  660
DKRVEKKLGT DMTTFTNNIC SLDVMFDDNE TQETDIPSLQ KQNSSACVDD DNKENCGQAY  720
KPTKYGIIDE KNSYKDTVDN SQPNVNQQRL MVDASAAAIE QEPSGVLVEH DVNDLTLSPD  780
QVGLKSNRGL VTSTKTPKSM NRTLEEVPNQ NGHLKLSSKN PCSRINSNSP CVRAKEHENL  840
SVAVTRVQAP ADNSGEQTRK DGGFETCSIF GGTPFRKGLE SPSAWKSPCE HTAATYANAQ  900
EVLVNETPKA LQKDASGNDK DNCHGSPNQP GNHSQLASNA LIERRTLDFS ECGTPSKGDD  960
NKSSAISSKS PSSYLLKGCR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-59372116159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-59372116159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g14360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430625.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_017430626.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A0S3RNV20.0A0A0S3RNV2_PHAAN; Uncharacterized protein
STRINGXP_007161344.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein