PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g18120.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 87aa MW: 9824.16 Da PI: 10.0515

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g18120.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	8.9e-09	14	46	1	32
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 rg+W++eEd l+ +v+ +G+g +W + +++ g Vang01g18120.1 14 RGPWSPEEDATLKAYVESHGTGgNWIALPKKAG 46 89***********************99888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-18	5	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.01E-9	8	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.711	9	83	IPR017930	Myb domain
SMART	SM00717	3.8E-7	13	81	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-9	14	77	IPR001005	SANT/Myb domain
CDD	cd00167	6.56E-6	16	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKAYVE SHGTGGNWIA LPKKAGFSLF FPNTYSHFSN 60 TFFSFQTDND VKNYWNTKLK KKIMAGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g18120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-106	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429624.1	2e-35	PREDICTED: transcription factor RAX2-like
Swissprot	Q9SJL7	1e-30	RAX2_ARATH; Transcription factor RAX2
TrEMBL	A0A0S3RPK8	6e-34	A0A0S3RPK8_PHAAN; Uncharacterized protein
TrEMBL	A0A4D6MCD3	4e-34	A0A4D6MCD3_VIGUN; Myb proto-oncogene protein
STRING	GLYMA14G10483.1	6e-33	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	5e-33	MYB family protein

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]