PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18130.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 391aa    MW: 44679.7 Da    PI: 6.9523
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093233582055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Vang01g18130.1 323 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 358
                     5679*****************************885 PP
2ELK37.84.1e-13278299122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++LlrKYsgyL+sLkqE+s
  Vang01g18130.1 278 ELKNHLLRKYSGYLSSLKQELS 299
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-20134178IPR005540KNOX1
PfamPF037909.9E-22135177IPR005540KNOX1
SMARTSM012563.9E-30185236IPR005541KNOX2
PfamPF037911.4E-24189235IPR005541KNOX2
PfamPF037892.8E-10278299IPR005539ELK domain
SMARTSM011883.5E-7278299IPR005539ELK domain
PROSITE profilePS5121311.296278298IPR005539ELK domain
PROSITE profilePS5007112.989298361IPR001356Homeobox domain
SuperFamilySSF466891.37E-19299374IPR009057Homeodomain-like
SMARTSM003892.1E-13300365IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-27303364IPR009057Homeodomain-like
CDDcd000862.36E-12310362No hitNo description
PfamPF059201.1E-16318357IPR008422Homeobox KN domain
PROSITE patternPS000270336359IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEGYTNNNHL SENTAPSPSP RPNFLYSPPT GGSHSHSHSH HQHQHQHHSH HHQHHQFPIN  60
TFHLQSGGSD HCFQSDQVAP HPSVKTEAST SQLHAPIFHY PLMRGTLHSN TTTTMHHHPH  120
QQGGSPTSST TEVEAIKAKI IAHPQYSNLL EAYMDCQKIG APPEVVARMV AAKQEFEARQ  180
RSSGGSRDTS KDPELDQFME AYYDMLVKYR EELTRPIQEA MDFMRRIETQ LNMLCNGPVR  240
IFSAEDKCEG VGSSDEDQEN SGGETELPEI DPRAEDRELK NHLLRKYSGY LSSLKQELSK  300
KKKKGKLPKD ARQKLLNWWE LHYKWPYPSE SEKVALAEST GLDQKQINNW FINQRKRHWK  360
PSEDMQFMVM DGLHPQSATL YMDGHYMADV *
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g18130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1070020.0HM107002.1 Glycine max KNOX-like DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429095.10.0PREDICTED: homeotic protein knotted-1
SwissprotO041341e-174KNAP1_MALDO; Homeobox protein knotted-1-like 1
TrEMBLA0A0S3RPQ70.0A0A0S3RPQ7_PHAAN; Uncharacterized protein
STRINGGLYMA14G10430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-143KNOTTED-like from Arabidopsis thaliana