PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18170.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 296aa    MW: 33137.9 Da    PI: 6.7769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
   Vang01g18170.1 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding391.9e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   Vang01g18170.1  69 GGFSEEEDNIICSLYISIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.903966IPR017930Myb domain
SuperFamilySSF466894.39E-2711109IPR009057Homeodomain-like
SMARTSM007173.8E-131364IPR001005SANT/Myb domain
PfamPF002493.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-241569IPR009057Homeodomain-like
CDDcd001672.03E-101662No hitNo description
SMARTSM007176.6E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129416.09867117IPR017930Myb domain
PfamPF002494.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2370117IPR009057Homeodomain-like
CDDcd001671.19E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLRHGG FSEEEDNIIC SLYISIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRREPRPGFN DQDSIKKLLI KLGGRFSGDY YQPTLDGLNL QFSSQGQQVY QEQVHVGSSS  180
SSACIVANNE VHFGQTGQYS GVDDMMQGQD GNFTPSFEEM VPSSNYSDGL EFLYNEGMIL  240
HKITDSTITT TCDQNTTTTT NWDETTTSIY HHDSLASHFE GQECALQEFS YPGAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g18170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527745.11e-132transcription factor RAX3
RefseqXP_028235020.11e-132transcription factor RAX3-like
TrEMBLA0A0B2SED31e-131A0A0B2SED3_GLYSO; Transcription factor RAX3
TrEMBLA0A0R4J3G31e-131A0A0R4J3G3_SOYBN; Uncharacterized protein
STRINGGLYMA06G05260.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.19e-80myb domain protein 84